Biomedical Engineering
Master of Science in Engineering
Doctor of Philosophy
For More Information
Campus address: Biomedical Engineering Building (BME) 3.308AF, phone (512) 475-8500, fax (512) 471-0616; campus mail code: C0800
Mailing address: The University of Texas at Austin, Graduate Program, Department of Biomedical Engineering, 1 University Station C0800, Austin TX 78712
E-mail: bme-grad@engr.utexas.edu
URL: http://www.bme.utexas.edu/
Objectives
Graduate degrees in biomedical engineering have been offered by the University since 1974. The undergraduate degree program and the Department of Biomedical Engineering were established in 2001. The department fosters a unique environment in which scholars and scientists may excel in both fundamental research and its translation to clinical applications.
The mission of the UT Austin graduate program in biomedical engineering is to educate students in the fundamentals of engineering and science as they affect biology and medicine and to perform multidisciplinary, disease-oriented research at the molecular, cellular, organ, and systemic levels. The program aims fully to integrate biology and engineering research and education at the graduate level.
The graduate program has more than a hundred students, with backgrounds in biology, chemistry, physics, and various engineering disciplines. Students come from all over the United States and the world to gain unique knowledge and experience. Apart from coursework and research in some of the world’s premier laboratories, there are many opportunities for personal and professional development through interaction with industry professionals, conference attendance, and seminars with leaders in the field.
Doctoral and master’s thesis students receive full financial support, either through teaching assistant or graduate research assistant positions or through one of many fellowships. More than half the students in the program have fellowships from a source like the National Science Foundation, IGERT, the Graduate School, or the Cockrell School of Engineering.
Facilities for Graduate Work
The Department of Biomedical Engineering has offices and laboratories in the Biomedical Engineering Building, completed in 2008. Research is also conducted at the partner institutions in Houston, at the University of Texas Medical Branch at Galveston, and at the University of Texas Health Science Center at San Antonio. Students have access to facilities for research in biochemical and protein engineering, cell and tissue engineering, gene therapy, cell-electronic interfaces and nanostructure engineering, cell biomechanics, whole-body biomechanics and gait analysis, thermal engineering, optical spectroscopy and imaging, ultrasound imaging, laser-tissue interactions, image processing, biosignal analysis and computer graphics, protein bioinformatics, functional genomics, protein modeling, and computational disease diagnosis.
In addition to individual research laboratories, a number of core facilities are available for research at the medical school campuses. The following are located on the University of Texas at Austin campus:
Institute for Cellular and Molecular Biology core facilities. The Institute for Cellular and Molecular Biology (ICMB) was created by the College of Natural Sciences to foster the growth of modern cell and molecular biology research at the University. The ICMB provides four core user facilities. The DNA and Genomics Facility provides automated sequencing and fragment analysis. Two ABI Prism 377 DNA sequencers and an ABI 3700 DNA analyzer are used. The ABI 3700 is a capillary-based sequencer that allows up to six hundred samples to be run daily; the facility currently analyzes more than two thousand samples monthly, with a success rate of about 95 percent. An average run generates readable data between five hundred and seven hundred bases, and turnaround time is one or two days.
The Protein Microanalysis Facility provides de-novo N-terminal protein/peptide sequencing, internal sequencing/peptide mapping, amino acid composition analysis, peptide synthesis, and mass spectrometry (ESI-MS, LC-MS, and MALDI-TOF-MS). Liquid chromatography, high-pressure liquid chromatography (HPLC), and capillary electrophoresis are available for preparative and analytical runs. Two protein sequencers, an amino acid analyzer, a peptide synthesizer, a capillary electrophoresis system, an analytical HPLC system, an electrospray mass spectrometer, and a MALDI-TOF mass spectrometer are operated in the facility. The running of gels and electroblotting for sequencing also can be arranged.
The Microscopy and Imaging Facility contains a 100kv transmission electron microscope (TEM), a high-resolution 100kv TEM, a scanning electron microscope (SEM), a flow cytometer, and a laser scanning confocal microscope. The laser scanning fluorescence confocal microscope features a krypton/argon mixed gas laser, an ultraviolet laser, and DIC optics in an inverted microscope. Three channels can be monitored simultaneously at high resolution. The lasers supply excitation at 354/361 nm, 488 nm, 568 nm, and 647 nm.
The IGERT Microscopy/Spectroscopy User Facility contains four major pieces of equipment. A user-facility manager is available to provide training and assistance.
- A deconvolution microscope workstation with full-featured image processing software, coupled with a high-resolution, low-light camera, can computationally reassign (deconvolve) the out-of-focus components of a through-focus series of a specimen using either user-defined theoretical or measured-point spread functions. The image processing software has features for both the quantitation of image sets and extensive three-dimensional reconstruction and volume rendering.
- A Fourier transform infrared (FTIR) spectrophotometer with added auxiliary experimental module can be used in grazing angle and transmission modes for the characterizations of thin films and monolayers.
- An ultraviolet/visible diode array spectrophotometer with Peltier temperature-controlled cuvette holder collects simultaneous wavelengths in either absorbance or transmittance modes. This ability is required to characterize samples with rapid reaction times and to follow enzyme kinetics.
- A cuvette-based scanning spectrofluorometer with a laser fluorescence lifetime module is used to study a wide variety of liquid and solid samples in both steady-state and time-resolved fluorescence modes. The intensity-based, time-domain system accurately measures fluorescence decays over multiple time scales; coupled with the dye laser/frequency doubler, it allows accurate measurements of solid samples with low quantum yields or turbid liquid samples with high scattering properties.
Texas Materials Institute and Center for Nano and Molecular Science and Technology core facilities. The Texas Materials Institute (TMI) maintains core facilities in electron microscopy, surface analysis, polymer characterization, and X-ray scattering. The Center for Nano and Molecular Science and Technology (CNM) is a multidisciplinary, collaborative research center focused on several emerging areas of research. A multidepartmental effort of the College of Natural Sciences and the Cockrell School of Engineering, CNM houses extensive shared user facilities, including a picosecond fluorescence lifetime spectrometer/microscope; an FTIR spectrometer; a near-field scanning optical microscope; organic thin film fabrication equipment; beam lithography systems; a molecular force probe microscope; a transmission electron microscope; and a time-correlated single photon counting facility.
Animal Resources Center facilities. The Animal Resources Center (ARC) is a fourteen-thousand-square-foot state-of-the-art facility in which animal surgical procedures are performed. A separate building houses transgenic and knock-out animals. The facility is fully staffed and equipped in compliance with NIH and AAALAC guidelines for accreditation. Available are animal operating rooms, support staff, equipment for preparing tissue specimens, and veterinary consultation for both animal husbandry and surgery.
Computer and computational facilities. All research groups maintain computers for use by their graduate students, and each academic unit has one or more core computer facilities. The University also has core computer user facilities across campus. In addition, advanced computational facilities are maintained by the Institute for Computational Engineering and Sciences (ICES). Extensive computing facilities are available to faculty members and students, including a scientific visualization lab, a medium-sized massively parallel processing computer, a network of eighteen RS6000s networked by optic fiber, and many X-terminals. Also available are a forty-five-node Intel Paragon and a thirty-two-node Cray J90.
Library facilities. The University has outstanding library facilities, including a general collection of 2.5 million volumes in the Perry-Castañeda Library and topical collections in specialized libraries like the Mallet Chemistry Library, the McKinney Engineering Library, and the Life Sciences Library.
Areas of Study
The biomedical engineering program is interdisciplinary, with a faculty that includes members of the School of Biological Sciences, the Departments of Kinesiology and Health Education, Chemistry and Biochemistry, Psychology, Biomedical Engineering, and several other departments in the Cockrell School of Engineering. In addition, several faculty members from the University of Texas Medical Branch at Galveston, the University of Texas Health Science Center at San Antonio, the University of Texas Health Science Center at Houston, and the University of Texas M. D. Anderson Cancer Center serve on the Graduate Studies Committee and supervise biomedical engineering students.
The current research of this faculty is focused in the following areas: biomedical imaging and instrumentation, cellular and biomolecular engineering, computational biomedical engineering, and instrumentation. Research activities embrace such topics as bioinstrumentation, modeling and control of biological systems, nerve fiber regeneration, biomedical computer and information technology, biomechanics, cell and tissue mechanics, thermal processes, musculoskeletal modeling, acquisition and analysis of in vivo and ex vivo spatial human biomechanics data, acquisition of physiological data by noninvasive means, cell and tissue engineering, design and testing of novel fluid and drug delivery systems, effects of laser radiation on biological material, laser applications in medicine, coherence imaging of biological materials, pulsed photothermal tomography, biorheology, visual system instrumentation, computer vision, production and purification of genetically engineered proteins, DNA and drug delivery, cell-electronic interfaces, acquisition and processing of neurological signals, neuroprostheses, applications of finite element modeling in medicine, acoustics and ultrasound, image processing, thermography, hyperthermia, genomic signal processing, biological and medical informatics, and nanotechnology.
Graduate Studies Committee
The following faculty members served on the Graduate Studies Committee in the spring semester 2013.
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Lawrence D Abraham Catherine G Ambrose Chandrajit L Bajaj Aaron Blair Baker James A Bankson Ronald E Barr Adela Ben-Yakar Alan C Bovik John H Byrne Ray T Chen Kevin N Dalby Kenneth R Diller Jonathan B Dingwell Andrew K Dunn Andrew Ellington Stanislav Emelianov Peter R Gascoyne Wilson S Geisler III George Georgiou Joydeep Ghosh Lisa Griffin Robin Gutell Mark F Hamilton Ning Jiang Daniel Johnston Edward M Marcotte |
Mia K Markey Thomas E Milner Tessie J Moon John A Pearce Nicholas A Peppas Martin Poenie Gregory P Reece Pengyu Ren David Ress Krishnendu Roy Henry G Rylander III Michael S Sacks Christine E Schmidt Jason B Shear Li Shi Michael H Smolensky Hugh D Smyth D M Snodderly Konstantin V Sokolov Jeanne Casstevens Stachowiak Laura J Suggs James W Tunnell Jonathan W Valvano Bugao Xu Xiaojing Zhang |
Admission Requirements
The graduate adviser and the Admissions Committee make all admission decisions. Standards for entrance into the program exceed the minimum standards established by the University. Students must have a bachelor’s degree with the following coursework or equivalent knowledge: freshman biology, freshman inorganic chemistry, differential equations, probability and statistics, and calculus-based physics. An applicant with a degree in an area other than engineering must take specified preliminary coursework before applying to the graduate program in biomedical engineering. The coursework does not need to be completed at UT Austin. Information about the admission process is given at http://www.bme.utexas.edu .
Admission decisions are based on a careful review of all aspects of each applicant’s file, including score on the Test of English as a Foreign Language, if needed, grade point average, Graduate Record Examinations scores, letters of recommendation, personal statement, and previous research or work experience. Only the most qualified applicants are accepted. Admission is not based on test scores and grade point averages alone; other important factors include the applicant’s statement of purpose, reference letters, résumé, and transcripts. The number of students admitted each semester depends on the availability of supervising faculty members to provide research facilities and possible financial support. Most students are admitted for doctoral study, but students interested in the MSE are also considered on a case-by-case basis.
All applicants whose native language is not English must submit a score on the Test of English as a Foreign Language (TOEFL).